My Blog.

Computational Neuroscience

Computational Networking Pre-requisitesComputational Networking Pre-requisitesRecommended Background**: Familiarity with basic concepts in linear algebra, calculus, and probability theory. Specifically, ability to understand simple equations involving vectors and matrices, differentiate simple functions, and understand what a probability distribution is. For video lectures reviewing these topics, please visit the Linear Algebra, Calculus, and Probability sections of Khanacademy.org. For homeworks, some familiarity with Matlab/Octave or Python would be useful. No prior bac

Syllabus

Topics that we will cover in this course:

  1. Basic Neurobiology
  2. Neural Encoding
  3. Neural Decoding
  4. Information Theory
  5. Modeling Single Neurons
  6. Synapse and Network Models: Feedforward and Recurrent Networks
  7. Synaptic Plasticity and Learning

Schedule

  • Week 1: Course Introduction and Basic Neurobiology (Rajesh Rao)
  • Week 2: What do Neurons Encode? Neural Encoding Models (Adrienne Fairhall)
  • Week 3: Extracting Information from Neurons: Neural Decoding (Adrienne Fairhall)
  • Week 4: Information and Coding Principles (Adrienne Fairhall)
  • Week 5: Simulating the Brain from the Ground Up: Models of Single Neurons (Adrienne Fairhall)
  • Week 6: Modeling Synapses and Networks of Neurons (Rajesh Rao)
  • Week 7: How do Brains Learn? Modeling Synaptic Plasticity and Learning (Rajesh Rao)
  • Week 8: Learning to Act: Reinforcement Learning (Rajesh Rao)

Recommended Reading

  • Week 1: Dayan and Abbott, Theoretical Neuroscience, Chapter 1 and Mathematical Appendix
  • Week 2: Dayan and Abbott, Theoretical Neuroscience, Chapter 2; Spikes, Rieke et al, appendices
  • Week 3: Dayan and Abbott, Theoretical Neuroscience, Chapter 3
  • Week 4: Dayan and Abbott, Theoretical Neuroscience, Chapter 4
  • Week 5: Dayan and Abbott, Theoretical Neuroscience, Chapters 5 & 6
  • Week 6: Dayan and Abbott, Theoretical Neuroscience, Chapter 7
  • Week 7: Dayan and Abbott, Theoretical Neuroscience, Chapters 8 & 10
  • Week 8: Dayan and Abbott, Theoretical Neuroscience, Chapter 9